PlantTFDB
Plant Transcription Factor Database
v3.0
Center for Bioinformatics, Peking University, China Previous versions:v1.0 v2.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g14190.1
Common NameP0046H10.13
Organism
Taxonomic ID
Taxonomic Lineage
Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Liliopsida; commelinids; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 961aa    MW: 103886 Da    PI: 7.9232
Description NF-X1-type zinc finger protein, putative, expressed
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g14190.1genomeTIGR6.1View CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.84e-07231248118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H Cq +CH+GpC++C
  LOC_Os06g14190.1 231 CGNHACQDICHPGPCGEC 248
                       ****************** PP

2zf-NF-X122.91.8e-07289306118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C+ +CHeG+CppC
  LOC_Os06g14190.1 289 CGVHRCKVTCHEGDCPPC 306
                       ****************** PP

3zf-NF-X116.61.7e-05384402119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H Cq lCH G CppC 
  LOC_Os06g14190.1 384 CGQHGCQLLCHSGHCPPCL 402
                       ******************6 PP

4zf-NF-X118.93.2e-06494510117
          zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                       CG+H C++ CH+ pC+p
  LOC_Os06g14190.1 494 CGMHACNRSCHPSPCDP 510
                       ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PANTHERPTHR12360:SF001914No hitNo description
PANTHERPTHR1236001914No hitNo description
SMARTSM004380.023112130IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0019167186IPR000967Zinc finger, NF-X1-type
PfamPF014220.00013231248IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00023231250IPR000967Zinc finger, NF-X1-type
PfamPF014225.6e-05289306IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001289308IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00072384403IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62441459IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029494529IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16538559IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006139Biological Processnucleobase-containing compound metabolic process
GO:0006950Biological Processresponse to stress
GO:0008150Biological Processbiological_process
GO:0008152Biological Processmetabolic process
GO:0009058Biological Processbiosynthetic process
GO:0009607Biological Processresponse to biotic stimulus
GO:0009628Biological Processresponse to abiotic stimulus
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0009987Biological Processcellular process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functionsequence-specific DNA binding transcription factor activity
GO:0005488Molecular Functionbinding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000009anatomycultured plant callus
PO:0005052anatomyplant callus
PO:0006340anatomyadult vascular leaf
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009011anatomyplant structure
PO:0009025anatomyvascular leaf
PO:0009046anatomyflower
PO:0009049anatomyinflorescence
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MICYDMVRRS APVWSCGSCF SIFHLPCIRK WARSPASAAD ASDPDSSWRC PGCQSVHAVP  60
ARELAYTCFC GRRREPPNDL FLTPHSCGEP CSKPLEKADP AVKADDAAAT RCPHVCVLQC  120
HPGPCPPCKA FAPDRLCPCG KQTIVRRCAD RTTPVTCGQR CDRLLPCRRH RCEKVCHTGP  180
CGDCNVLISA RCFCGKKTET LLCGEMELKG NLSEKDGVFS CSEACSHMLS CGNHACQDIC  240
HPGPCGECEL MPGKVTACHC GKTRLLEKRA SCLDPIPTCD KVCDKKLPCG VHRCKVTCHE  300
GDCPPCVVRV EQRCRCGSSG QMVECYKVLE EEFRCNKPCG RKKNCGRHRC SECCCPLSKP  360
LARLEGGNWD PHLCQIPCGK KLRCGQHGCQ LLCHSGHCPP CLETIFNDLT CACGRTSIPP  420
PLPCGTPTPS CPHQCLVPQP CGHPATHQCH FGDCPPCVVP VMRECIGGHV VLRNIPCGSK  480
DIRCNQPCGK NRQCGMHACN RSCHPSPCDP PPANGDASSS TGGRASCGQV CGAPRRECKH  540
TCTAPCHPSS PCPDLRCEFP MTIACSCGRI TATVPCSAGG TANGDNMFEV SIIQKLPMPL  600
QPVESDGRRV PLGQRKLSCD EDCAKMERKR VLAEAFDITP PNLDALHFGE NSNASDLLSD  660
LFRREPKWVM AIEERCKFLV LGKTRGNSSG NLKVHVFCHM TKDKRDAIRV IADRWKLSVQ  720
AAGWEPKRFI TIHPTPKSKA PARILGSKPG VFVAASHPFF DPLVDMDPRL VVAMLDLPRD  780
ADVSALVLRF GGECELVWLN DKNAVAVFND PARAATALRR LDYGSAYQGA AVFLPSSSAQ  840
PGNVWVAGQK DGVAATKSSA NPWKKATASE PDPSSGDWTG VLGQAPGSVW RRGGDTVAQV  900
MGTSNRWNAL ESDAATSSRP VEESKPAPRT DAVSSAGPST APPVSKMQPE VEVDDWEEAC  960
E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.176650.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO293675300.0
GeneVestigatorOs.17665.1.S1_x_at0.0
Expression AtlasLOC_Os06g14190-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g14190
Phenotype -- QTL ? help Back to Top
Source Description
Grameneroot number, brown planthopper resistance, seed number, seed set percent, rice yellow mottle virus resistance, days to heading, plant height, panicle length, leaf length, leaf width, spikelet number, chalkiness of endosperm, chlorophyll content, 1000-seed weight, lodging incidence, culm thickness, iron sensitivity, seed dormancy, tiller bud dormancy, culm length, alkali digestion, seed length to width ratio, drought tolerance, primary branch, secondary branch, gelatinization temperature, consistency viscosity, hot paste viscosity, cool paste viscosity, yield, spikelet density, carbon content, sodium concentration, panicle number, embryosac abortion
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055180.0Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Query Start Query End Hit Start Hit End Description
RefseqNP_001057298.10.01961721016Os06g0252300, partial
SwissprotQ9SY590.019612241188NFXL1_ARATH NF-X1-type zinc finger protein NFXL1
TrEMBLQ652W30.019611571117Q652W3_ORYSJ Putative TF-like protein
TRANSFACT066760.019612241188At1g10170
SRINGLOC_Os06g14190.10.019611961
Ortholog Group ? help Back to Top
Ortholog Group IDTaxa NumberGene Number
OG768644362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1